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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11587138 chr1:201120570 C/T 3.89E-5 402 9.28 15.63 15.3 KM Plot
LGG rs115892257 chr3:153665990 A/T 0 407 15.17 16.47 0.23 KM Plot
LGG rs115916549 chr2:228075358 C/T 0 405 15.7 14.43 1.23 KM Plot
LGG rs11593429 chr10:63331628 T/C 2.85E-5 401 16.28 11.05 17.07 KM Plot
LGG rs11597683 chr10:63317759 G/T 3.99E-6 407 15.97 11.17 11.7 KM Plot
LGG rs11599853 chr10:63331531 C/A 2.85E-5 401 16.28 11.05 17.07 KM Plot
LGG rs116139949 chr9:95479978 C/T 0.000148 407 15.17 17.7 7.12 KM Plot
LGG rs11615712 chr12:69619736 A/T 6.44E-5 407 18.2 14.47 15.17 KM Plot
LGG rs116254635 chr15:31959305 C/T 0.000167 402 15.77 15.2 11.8 KM Plot
LGG rs116295738 chr9:95509594 G/A 0.000148 407 15.17 17.7 7.12 KM Plot
LGG rs116303612 chr4:84427707 C/T 1.11E-15 397 14.85 18.13 5.17 KM Plot
LGG rs116326536 chr6:135166428 G/A 0.000145 406 15.05 17.68 7.88 KM Plot
LGG rs116665775 chr4:84427838 G/A 8.88E-16 399 14.93 17.73 5.17 KM Plot
LGG rs116879682 chr9:95468919 C/T 0.000148 407 15.17 17.7 7.12 KM Plot
LGG rs116961657 chr20:3351412 C/G 1.04E-7 406 15.93 11.55 6.83 KM Plot